SNP Profiles of PA 175 [PER] View Data

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_Input profile	TT	CC	CC	GG	CC	GG	AA	CC	GG	CC	GG	GG	AA	CC
1._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
2._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
3._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
4._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
5._RUQ_37	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
6._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
7._PA_175_[PER]	_	_	CC	GG	CC	_	AA	CC	GG	CC	_	_	AA	_
8._NA	TT	CC	CC	GG	CC	GG	AA	CC	GG	CC	GG	GG	AA	CC
9._NA	TT	CC	CC	GG	CC	GG	AA	CC	GG	CC	GG	GG	AA	CC
10._NA	TT	CC	CC	GG	CC	GG	AA	CC	GG	CC	GG	GG	AA	CC
11._NA	TT	CC	CC	GG	CC	GG	AA	CC	GG	CC	GG	GG	AA	CC
12._RUQ_37	_	_	CC	_	_	_	_	_	GG	_	GG	_	_	_
13._-	AA	CC	CC	CC	GG	GG	AA	GG	GG	GG	GG	GG	AA	GG
14._RUQ_37	AA	CC	CC	CC	GG	GG	AA	GG	GG	GG	GG	GG	AA	GG
15._MITC-000016	AA	CC	CC	CC	GG	GG	AA	GG	GG	GG	GG	GG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AC	CT	GT	CG	AC	TT	TT	CT	GG	AG	TT	AA	GG
1._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
2._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
3._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
4._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
5._RUQ_37	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
6._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	GG	_	_	_	GG
7._PA_175_[PER]	AA	AC	CT	GT	CG	AC	_	TT	_	-	_	_	_	GG
8._NA	AA	AC	CT	GT	CG	AC	TT	TT	CC	GG	AG	TT	AA	GG
9._NA	AA	AC	CT	GT	CG	AC	TT	TT	CC	GG	AG	TT	AA	GG
10._NA	AA	AC	CT	GT	CG	AC	TT	TT	CC	GG	AG	TT	AA	GG
11._NA	AA	AC	CT	GT	CG	AC	TT	TT	CC	GG	AG	TT	AA	GG
12._RUQ_37	_	AA	_	_	CG	AC	TT	_	CT	GG	AG	_	AA	GG
13._-	_	AC	_	AC	CG	AC	AA	AA	_	CC	AG	AA	AA	CC
14._RUQ_37	_	AC	_	AC	CG	AC	AA	AA	_	CC	AG	AA	AA	CC
15._MITC-000016	_	AC	_	AC	CG	AC	AA	AA	_	CC	AG	AA	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	CC	CC	AA	CC	CC	GG	GG	TT	TT	CT	CT	CT	CG	GG
1._PA_175_[PER]	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
2._PA_175_[PER]	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
3._PA_175_[PER]	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
4._PA_175_[PER]	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
5._RUQ_37	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
6._PA_175_[PER]	_	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
7._PA_175_[PER]	CC	CC	AA	_	CC	_	_	_	TT	_	_	CT	CG	GG
8._NA	CC	CC	AA	CT	CC	GG	GG	TT	TT	TT	CT	CT	CG	GG
9._NA	CC	CC	AA	CT	CC	GG	GG	TT	TT	TT	CT	CT	CG	GG
10._NA	CC	CC	AA	CT	CC	GG	GG	TT	TT	TT	CT	CT	CG	GG
11._NA	CC	CC	AA	CT	CC	GG	GG	TT	TT	TT	CT	CT	CG	GG
12._RUQ_37	_	_	AA	CT	_	_	_	_	TT	_	_	_	CG	_
13._-	_	GG	AA	_	GG	CC	GG	_	AA	AG	AG	AG	CG	GG
14._RUQ_37	_	GG	AA	_	GG	CC	GG	_	AA	AG	AG	AG	CG	GG
15._MITC-000016	_	GG	AA	_	GG	CC	GG	_	AA	AG	AG	AG	CG	GG

Input profile: PA_175_[PER] RUQ_37

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._PA_175_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_175_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 8

Dapeng Zhang, 2016

3._PA_175_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 9

Dapeng Zhang, 2016

4._PA_175_[PER]

identical
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 12

Dapeng Zhang, 2016

5._PA_175_[PER] RUQ_37

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

6._PA_175_[PER]

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

7._PA_175_[PER]

identical
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

8._PA_175_[PER] NA

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._PA_175_[PER] NA

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._PA_175_[PER] NA

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

11._PA_175_[PER] NA

96.4 %
42 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

12._PA_175_[PER] RUQ_37

93.8 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

13._PA_175_[PER] -

47.2 %
36 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 27, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_175_[PER] RUQ_37

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._PA_175_[PER] MITC-000016

47.2 %
36 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP577	20	TcSNP591
21	TcSNP602	22	TcSNP619	23	TcSNP702	24	TcSNP723	25	TcSNP731
26	TcSNP799	27	TcSNP823	28	TcSNP872	29	TcSNP878	30	TcSNP891
31	TcSNP998	32	TcSNP999	33	TcSNP1060	34	TcSNP1063	35	TcSNP1111
36	TcSNP1126	37	TcSNP1253	38	TcSNP1309	39	TcSNP1439	40	TcSNP1442
41	TcSNP1458	42	TcSNP1484